2FIJ Crystal Structure Analysis of the A-DNA Decamer GCGT-2'OMeA-aU-ACGC, with Incorporated 2'-O-Methylated-Adenosine (2'OMeA) and Arabino-Uridine (aU) date
authors Egli, M., Li, F.
compound source
symmetry
R_factor
R_Free 0.16922
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.19
ligand A2M, CL, NCO, UAR enzyme
Primary reference2'-Fluoroarabino- and arabinonucleic acid show different conformations, resulting in deviating RNA affinities and processing of their heteroduplexes with RNA by RNase H., Li F, Sarkhel S, Wilds CJ, Wawrzak Z, Prakash TP, Manoharan M, Egli M, Biochemistry. 2006 Apr 4;45(13):4141-52. PMID:16566588
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (2fij.pdb1.gz) 23 Kb
  • LPC: Ligand-Protein Contacts for 2FIJ
  • CSU: Contacts of Structural Units for 2FIJ
  • Likely Quarternary Molecular Structure file(s) for 2FIJ
  • Structure Factors (145 Kb)
  • Retrieve 2FIJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FIJ from S2C, [Save to disk]
  • Re-refined 2fij structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2FIJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2FIJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FIJ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fij_B] [2fij] [2fij_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2FIJ
  • Community annotation for 2FIJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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