2FM4 Transferase date Jan 06, 2006
title Nmr Structure Of The Phosphoryl Carrier Domain Of Pyruvate P Dikinase
authors J.B.Ames
compound source
Molecule: Pyruvate, Phosphate Dikinase
Chain: A
Synonym: Pyruvate, Orthophosphate Dikinase
Ec: 2.7.9.1
Engineered: Yes
 Organism_scientific: Clostridium Symbiosum
Organism_taxid: 1512
Gene: Ppdk
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
ligand
enzyme Transferase E.C.2.7.9.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceExamination of the structure, stability, and catalytic potential in the engineered phosphoryl carrier domain of pyruvate phosphate dikinase., Lin Y, Lusin JD, Ye D, Dunaway-Mariano D, Ames JB, Biochemistry. 2006 Feb 14;45(6):1702-11. PMID:16460017
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (340 Kb) [Save to disk]
  • Biological Unit Coordinates (2fm4.pdb1.gz) 31 Kb
  • CSU: Contacts of Structural Units for 2FM4
  • Original NMR restraints for 2FM4 from PDB
  • Retrieve 2FM4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FM4 from S2C, [Save to disk]
    • View 2FM4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2FM4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FM4, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fm4] [2fm4_A]
  • SWISS-PROT database: [P22983]
  • Domain organization of [PPDK_CLOSY] by SWISSPFAM
    • Other resources with information on 2FM4
  • Community annotation for 2FM4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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