2FO3	Structural Genomics, Unknown Function	date	Jan 12, 2006
title	Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
authors	A.Dong, Y.Zhao, J.Lew, I.Kozieradski, Z.Alam, M.Melone, G.Wasney, M A.M.Edwards, C.H.Arrowsmith, J.Weigelt, M.Sundstrom, R.Hui, A.Bo W.Qiu, Structural Genomics Consortium (Sgc)
compound		source
Molecule: Ubiquitin-Conjugating Enzyme Chain: A Ec: 6.3.2.19 Engineered: Yes		Organism_scientific: Plasmodium Vivax Organism_taxid: 5855 Gene: Ost6, Pvx_083175 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Codon Plus Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: P28-Lic-Thrombin Derived From Pe
symmetry	Space Group: P 63 2 2	R_factor 0.204 R_Free 0.263
crystal cell	length a length b length c angle alpha angle beta angle gamma 58.004 58.004 117.114 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.86 Å
ligand		enzyme	Ligase E.C.6.3.2.19 BRENDA
Gene	PVX
Primary reference	Genome-scale protein expression and structural biology of Plasmodium falciparum and related Apicomplexan organisms., Vedadi M, Lew J, Artz J, Amani M, Zhao Y, Dong A, Wasney GA, Gao M, Hills T, Brokx S, Qiu W, Sharma S, Diassiti A, Alam Z, Melone M, Mulichak A, Wernimont A, Bray J, Loppnau P, Plotnikova O, Newberry K, Sundararajan E, Houston S, Walker J, Tempel W, Bochkarev A, Kozieradzki I, Edwards A, Arrowsmith C, Roos D, Kain K, Hui R, Mol Biochem Parasitol. 2007 Jan;151(1):100-10. Epub 2006 Nov 13. PMID:17125854

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk] Biological Unit Coordinates (2fo3.pdb1.gz) 20 Kb CSU: Contacts of Structural Units for 2FO3 Likely Quarternary Molecular Structure file(s) for 2FO3 Structure Factors (72 Kb) Retrieve 2FO3 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2FO3 from S2C, [Save to disk] Re-refined 2fo3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2FO3 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2FO3

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2FO3, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2fo3_A] [2fo3] SWISS-PROT database: [A5K893] Domain organization of [A5K893_PLAVI] by SWISSPFAM Domain found in 2FO3: [UBCc ] by SMART

Other resources with information on 2FO3

Community annotation for 2FO3 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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