2FPM	Recombination	date	Jan 16, 2006
title	Rada Recombinase In Complex With Amp-Pnp And High Concentrat
authors	Y.Wu, X.Qian, Y.He, I.A.Moya, Y.Luo
compound		source
Molecule: Dna Repair And Recombination Protein Rada Chain: A Engineered: Yes Mutation: Yes		Organism_scientific: Methanococcus Voltae Organism_taxid: 2188 Gene: Rada Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21-Codonplus-Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28b
symmetry	Space Group: P 61	R_factor 0.213 R_Free 0.239
crystal cell	length a length b length c angle alpha angle beta angle gamma 83.699 83.699 105.440 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	ANP, K, MG	enzyme
note	2FPM supersedes 1Z4D
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal Structure of Methanococcus voltae RadA in Complex with ADP: Hydrolysis-Induced Conformational Change., Qian X, Wu Y, He Y, Luo Y, Biochemistry 2005 Oct 25;44(42):13753-61. PMID:16229465

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk] Biological Unit Coordinates (2fpm.pdb1.gz) 51 Kb LPC: Ligand-Protein Contacts for 2FPM CSU: Contacts of Structural Units for 2FPM Likely Quarternary Molecular Structure file(s) for 2FPM Structure Factors (256 Kb) Retrieve 2FPM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2FPM from S2C, [Save to disk] Re-refined 2fpm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2FPM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2FPM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2FPM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2fpm] [2fpm_A] SWISS-PROT database: [O73948] Domain organization of [RADA_METVO] by SWISSPFAM Domains found in 2FPM: [AAA] [HhH1 ] by SMART

Other resources with information on 2FPM

Community annotation for 2FPM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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