2FRV	Oxidoreductase	date	Jun 10, 1997
title	Crystal Structure Of The Oxidized Form Of Ni-Fe Hydrogenase
authors	A.Volbeda, M.Frey, J.C.Fontecilla-Camps
compound		source
Molecule: Periplasmic Hydrogenase Chain: S, A, C, E, G, I Synonym: Cytochrome-C3 Hydrogenase Ec: 1.18.99.1		Organism_scientific: Desulfovibrio Gigas Organism_taxid: 879 Collection: Atcc 19364 Cellular_location: Periplasm
Molecule: Periplasmic Hydrogenase Chain: L, B, D, F, H, J Synonym: Cytochrome-C3 Hydrogenase Ec: 1.18.99.1		Organism_scientific: Desulfovibrio Gigas Organism_taxid: 879 Collection: Atcc 19364 Cellular_location: Periplasm
symmetry	Space Group: P 1	R_factor 0.201 R_Free 0.219
crystal cell	length a length b length c angle alpha angle beta angle gamma 112.780 113.160 133.910 90.03 90.02 119.99
method	X-Ray Diffraction	resolution	2.54 Å
ligand	F3S, FCO, MG, NI, O, SF4	enzyme	Oxidoreductase E.C.1.18.99.1 BRENDA
note	2FRV (Molecule of the Month:pdb111)
related structures	by homologous chain: 1FRF, 1YQ9
Gene Ontology	Chain Function Process Component F, J, B, H, D, L S, A, E, C, I, G

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (741 Kb) [Save to disk] Biological Unit Coordinates (2frv.pdb1.gz) 132 Kb Biological Unit Coordinates (2frv.pdb2.gz) 130 Kb Biological Unit Coordinates (2frv.pdb3.gz) 131 Kb Biological Unit Coordinates (2frv.pdb4.gz) 131 Kb Biological Unit Coordinates (2frv.pdb5.gz) 132 Kb Biological Unit Coordinates (2frv.pdb6.gz) 131 Kb LPC: Ligand-Protein Contacts for 2FRV CSU: Contacts of Structural Units for 2FRV Likely Quarternary Molecular Structure file(s) for 2FRV Retrieve 2FRV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2FRV from S2C, [Save to disk]

View 2FRV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2FRV

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2FRV, from MSDmotif at EBI Genome occurence of 2FRV's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d2frva_, region A [Jmol] [rasmolscript] [script source]     - Domain d2frvb_, region B [Jmol] [rasmolscript] [script source]     - Domain d2frvc_, region C [Jmol] [rasmolscript] [script source]     - Domain d2frvd_, region D [Jmol] [rasmolscript] [script source]     - Domain d2frve_, region E [Jmol] [rasmolscript] [script source]     - Domain d2frvf_, region F [Jmol] [rasmolscript] [script source]     - Domain d2frvg_, region G [Jmol] [rasmolscript] [script source]     - Domain d2frvh_, region H [Jmol] [rasmolscript] [script source]     - Domain d2frvi_, region I [Jmol] [rasmolscript] [script source]     - Domain d2frvj_, region J [Jmol] [rasmolscript] [script source]     - Domain d2frvl_, region L [Jmol] [rasmolscript] [script source]     - Domain d2frvs_, region S [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2frv] [2frv_G] [2frv_H] [2frv_E] [2frv_A] [2frv_S] [2frv_L] [2frv_F] [2frv_I] [2frv_C] [2frv_D] [2frv_J] [2frv_B] SWISS-PROT database: [P12944] [P12943] Domain organization of [PHNL_DESGI] [PHNS_DESGI] by SWISSPFAM

Other resources with information on 2FRV

Community annotation for 2FRV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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