2FTB Lipid Binding Protein date Jan 24, 2006
title Crystal Structure Of Axolotl (Ambystoma Mexicanum) Liver Bil Binding Protein Bound To Oleic Acid
authors S.Capaldi, M.Guariento, M.Perduca, S.M.Di Pietro, J.A.Santome, H.
compound source
Molecule: Fatty Acid-Binding Protein 2, Liver
Chain: A
Synonym: Bile Acid-Binding Protein, L-Fabp, Liver Basic Fab Fabp
 Organism_scientific: Ambystoma Mexicanum
Organism_common: Axolotl
Organism_taxid: 8296
Tissue: Liver
symmetry Space Group: P 43 21 2
R_factor 0.215 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.434 66.434 61.724 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand OLA enzyme
note 2FTB is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of axolotl (Ambystoma mexicanum) liver bile acid-binding protein bound to cholic and oleic acid., Capaldi S, Guariento M, Perduca M, Di Pietro SM, Santome JA, Monaco HL, Proteins. 2006 Mar 22;. PMID:16555310
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (2ftb.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 2FTB
  • CSU: Contacts of Structural Units for 2FTB
  • Likely Quarternary Molecular Structure file(s) for 2FTB
  • Structure Factors (83 Kb)
  • Retrieve 2FTB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FTB from S2C, [Save to disk]
  • Re-refined 2ftb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2FTB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2FTB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FTB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ftb_A] [2ftb]
  • SWISS-PROT database: [P81400]
  • Domain organization of [FABP2_AMBME] by SWISSPFAM
    • Other resources with information on 2FTB
  • Community annotation for 2FTB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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