2FWI Lyase date Feb 02, 2006
title Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide M H59d, From The Acidophilic Bacterium Acetobacter Aceti, Com With 5-Aminoimidazole Ribonucleotide (Air)
authors C.M.Starks, T.J.Kappock
compound source
Molecule: N5-Carboxyaminoimidazole Ribonucleotide Mutase
Chain: A, B
Engineered: Yes
Mutation: Yes
Organism_scientific: Acetobacter Aceti
Organism_taxid: 435
Strain: 1023
Gene: Pure
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Codonplus
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-23a(+)
symmetry Space Group: I 4 2 2
R_factor 0.164 R_Free 0.191
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.046 99.046 163.829 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.94 Å
ligand AIR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceBiochemical and Structural Studies of N(5)-Carboxyaminoimidazole Ribonucleotide Mutase from the Acidophilic Bacterium Acetobacter aceti., Constantine CZ, Starks CM, Mill CP, Ransome AE, Karpowicz SJ, Francois JA, Goodman RA, Kappock TJ, Biochemistry. 2006 Jul 11;45(27):8193-208. PMID:16819818
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (2fwi.pdb1.gz) 205 Kb
  • LPC: Ligand-Protein Contacts for 2FWI
  • CSU: Contacts of Structural Units for 2FWI
  • Likely Quarternary Molecular Structure file(s) for 2FWI
  • Structure Factors (402 Kb)
  • Retrieve 2FWI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FWI from S2C, [Save to disk]
  • Re-refined 2fwi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2FWI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2FWI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FWI, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fwi] [2fwi_A] [2fwi_B]
  • SWISS-PROT database: [Q2QJL3]
  • Domain organization of [Q2QJL3_ACEAC] by SWISSPFAM
  • Domain found in 2FWI: [AIRC ] by SMART
  • Other resources with information on 2FWI
  • Community annotation for 2FWI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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