2FZL Dna Binding Protein date Feb 09, 2006
title Structure Of C-Terminal Domain Of Archaeoglobus Fulgidus Xpb
authors L.Fan, A.S.Arvai, J.A.Tainer
compound source
Molecule: Dna Repair Protein Rad25, Xpb
Chain: A
Fragment: Residues 237-434
Engineered: Yes
 Organism_scientific: Archaeoglobus Fulgidus
Organism_taxid: 2234
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28b
symmetry Space Group: I 41 3 2
R_factor 0.249 R_Free 0.291
crystal
cell
length a length b length c angle alpha angle beta angle gamma
172.859 172.859 172.859 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand IPA enzyme
Primary referenceConserved XPB Core Structure and Motifs for DNA Unwinding: Implications for Pathway Selection of Transcription or Excision Repair., Fan L, Arvai AS, Cooper PK, Iwai S, Hanaoka F, Tainer JA, Mol Cell. 2006 Apr 7;22(1):27-37. PMID:16600867
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (2fzl.pdb1.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 2FZL
  • CSU: Contacts of Structural Units for 2FZL
  • Likely Quarternary Molecular Structure file(s) for 2FZL
  • Structure Factors (106 Kb)
  • Retrieve 2FZL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2FZL from S2C, [Save to disk]
  • Re-refined 2fzl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2FZL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2FZL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2FZL, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2fzl] [2fzl_A]
  • SWISS-PROT database: [O29889]
  • Domain organization of [O29889_ARCFU] by SWISSPFAM
  • Domain found in 2FZL: [HELICc ] by SMART
    • Other resources with information on 2FZL
  • Community annotation for 2FZL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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