2G7M Transferase date Feb 28, 2006
title Crystal Structure Of B. Fragilis N-Succinylornithine Transca P90e Mutant Complexed With Carbamoyl Phosphate And N-Acetyl
authors D.Shi, X.Yu, L.Roth, H.Morizono, N.M.Allewell, M.Tuchman
compound source
Molecule: Putative Ornithine Carbamoyltransferase
Chain: X, Y, Z, C, D, E
Ec: 2.1.3.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Bacteroides Fragilis
Organism_taxid: 817
Gene: Argf'
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 43
R_factor 0.218 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
156.654 156.654 120.201 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand AN0, CP, SO4 enzyme Transferase E.C.2.1.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
Z, X, D, C, Y, E
  • ornithine carbamoyltransfera...


  • Primary referenceA single mutation in the active site swaps the substrate specificity of N-acetyl-L-ornithine transcarbamylase and N-succinyl-L-ornithine transcarbamylase., Shi D, Yu X, Cabrera-Luque J, Chen TY, Roth L, Morizono H, Allewell NM, Tuchman M, Protein Sci. 2007 Aug;16(8):1689-99. Epub 2007 Jun 28. PMID:17600144
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (317 Kb) [Save to disk]
  • Biological Unit Coordinates (2g7m.pdb1.gz) 160 Kb
  • Biological Unit Coordinates (2g7m.pdb2.gz) 156 Kb
  • LPC: Ligand-Protein Contacts for 2G7M
  • CSU: Contacts of Structural Units for 2G7M
  • Likely Quarternary Molecular Structure file(s) for 2G7M
  • Structure Factors (514 Kb)
  • Retrieve 2G7M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2G7M from S2C, [Save to disk]
  • Re-refined 2g7m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2G7M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2G7M
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2G7M, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2g7m_C] [2g7m_E] [2g7m] [2g7m_D] [2g7m_Z] [2g7m_X] [2g7m_Y]
  • SWISS-PROT database: [Q64Z33]
  • Domain organization of [Q64Z33_BACFR] by SWISSPFAM
  • Other resources with information on 2G7M
  • Community annotation for 2G7M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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