2GC8	Transferase	date	Mar 13, 2006
title	Structure Of A Proline Sulfonamide Inhibitor Bound To Hcv Ns Polymerase
authors	A.Gopalsamy, R.Chopra, K.Lim, G.Ciszewski, M.Shi, K.J.Curran, S.F. K.Svenson, J.Bard, J.W.Ellingboe, A.Agarwal, G.Krishnamurthy, A. M.Orlowski, B.Feld, J.O'Connell, T.S.Mansour
compound		source
Molecule: Rna-Directed Rna Polymerase Chain: A, B Fragment: Rna-Dependent Rna Polymerase Ec: 2.7.7.48 Engineered: Yes		Organism_scientific: Hepatitis C Virus Organism_taxid: 11103 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)-Rp Expression_system_vector_type: Plasmid Expression_system_vector: Prset
symmetry	Space Group: P 21 21 21	R_factor 0.238 R_Free 0.273
crystal cell	length a length b length c angle alpha angle beta angle gamma 85.809 105.910 126.624 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	885 BindingDB	enzyme	Transferase E.C.2.7.7.48 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Discovery of proline sulfonamides as potent and selective hepatitis C virus NS5b polymerase inhibitors. Evidence for a new NS5b polymerase binding site., Gopalsamy A, Chopra R, Lim K, Ciszewski G, Shi M, Curran KJ, Sukits SF, Svenson K, Bard J, Ellingboe JW, Agarwal A, Krishnamurthy G, Howe AY, Orlowski M, Feld B, O'Connell J, Mansour TS, J Med Chem. 2006 Jun 1;49(11):3052-5. PMID:16722622

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (186 Kb) [Save to disk] Biological Unit Coordinates (2gc8.pdb1.gz) 92 Kb Biological Unit Coordinates (2gc8.pdb2.gz) 92 Kb LPC: Ligand-Protein Contacts for 2GC8 CSU: Contacts of Structural Units for 2GC8 Likely Quarternary Molecular Structure file(s) for 2GC8 Structure Factors (482 Kb) Retrieve 2GC8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2GC8 from S2C, [Save to disk] Re-refined 2gc8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2GC8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2GC8

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2GC8, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2gc8_A] [2gc8_B] [2gc8] SWISS-PROT database: [Q99AU2] Domain organization of [Q99AU2_9HEPC] by SWISSPFAM

Other resources with information on 2GC8

Community annotation for 2GC8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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