2GE2 Dna date Mar 17, 2006
title Solution Structure Of The Duplex Dna Containing The 3-(Deoxy N2-Yl)-2-Acetoaminofluorene
authors C.De Los Santos, T.Zaliznyak
compound source
Molecule: 5'-D(Cpgptpapcpgpcpaptpgpc)-3'
Chain: A
Engineered: Yes
 Synthetic: Yes

Molecule: 5'-D(Gpcpaptpgpcpgptpapcpg)-3'
Chain: B
Engineered: Yes
Synthetic: Yes
methodSolution NMR
ligand AFF enzyme
Primary referenceStructure and Stability of Duplex DNA Containing the 3-(Deoxyguanosin-N(2)-yl)-2-acetylaminofluorene (dG(N(2))-AAF) Lesion: A Bulky Adduct that Persists in Cellular DNA., Zaliznyak T, Bonala R, Johnson F, de Los Santos C, Chem Res Toxicol. 2006 Jun;19(6):745-52. PMID:16780352
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (15 Kb) [Save to disk]
  • Biological Unit Coordinates (2ge2.pdb1.gz) 12 Kb
  • LPC: Ligand-Protein Contacts for 2GE2
  • CSU: Contacts of Structural Units for 2GE2
  • Original NMR restraints for 2GE2 from PDB
  • Retrieve 2GE2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GE2 from S2C, [Save to disk]
    • View 2GE2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2GE2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GE2, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ge2_A] [2ge2] [2ge2_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2GE2
  • Community annotation for 2GE2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science