2GFR Neuropeptide date Mar 23, 2006
title Solution Structure Of Amphibian Tachykinin Uperolein Bound T Micelles
authors A.Dike, S.M.Cowsik
compound source
Molecule: Uperolein
Chain: A
Engineered: Yes
 Synthetic: Yes
Other_details: Chemical Synthesis. The Sequence Is Naturall In Uperoleia Rugosa (Wrinkled Toadlet).
methodSolution NMR
ligand PCA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of amphibian tachykinin Uperolein bound to DPC micelles., Dike A, Cowsik SM, J Struct Biol. 2006 Aug 1;. PMID:16979908
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (2gfr.pdb1.gz) 3 Kb
  • LPC: Ligand-Protein Contacts for 2GFR
  • CSU: Contacts of Structural Units for 2GFR
  • Original NMR restraints for 2GFR from PDB
  • Retrieve 2GFR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GFR from S2C, [Save to disk]
    • View 2GFR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2GFR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GFR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gfr] [2gfr_A]
  • SWISS-PROT database: [P08612]
  • Domain organization of [TKN1_UPERU] by SWISSPFAM
  • Domain found in 2GFR: [TK ] by SMART
    • Other resources with information on 2GFR
  • Community annotation for 2GFR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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