2GH6	Hydrolase	date	Mar 26, 2006
title	Crystal Structure Of A Hdac-Like Protein With 9,9,9-Trifluor Phenylnonan Amide Bound
authors	T.K.Nielsen, C.Hildmann, D.Riester, D.Wegener, A.Schwienhorst, R.
compound		source
Molecule: Histone Deacetylase-Like Amidohydrolase Chain: A, B, C, D Synonym: Hdac-Like Amidohydrolase; Hdah Ec: 3.5.1.- Engineered: Yes		Organism_scientific: Alcaligenaceae Bacterium Fb188 Organism_taxid: 242601 Strain: Dsm 11172 Gene: Hdah, Hdah1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: M15 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pqe Other_details: Source Organism Synonym Bordetella Sp. (Stra
symmetry	Space Group: P 1 21 1	R_factor 0.158 R_Free 0.214
crystal cell	length a length b length c angle alpha angle beta angle gamma 68.507 94.897 123.301 90.00 104.28 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	CF3, K, ZN	enzyme	Hydrolase E.C.3.5.1 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Complex structure of a bacterial class 2 histone deacetylase homologue with a trifluoromethylketone inhibitor., Nielsen TK, Hildmann C, Riester D, Wegener D, Schwienhorst A, Ficner R, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Apr 1;63(Pt, 4):270-3. Epub 2007 Mar 23. PMID:17401192

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (240 Kb) [Save to disk] Biological Unit Coordinates (2gh6.pdb1.gz) 62 Kb Biological Unit Coordinates (2gh6.pdb2.gz) 62 Kb Biological Unit Coordinates (2gh6.pdb3.gz) 61 Kb Biological Unit Coordinates (2gh6.pdb4.gz) 61 Kb Biological Unit Coordinates (2gh6.pdb5.gz) 232 Kb LPC: Ligand-Protein Contacts for 2GH6 CSU: Contacts of Structural Units for 2GH6 Likely Quarternary Molecular Structure file(s) for 2GH6 Structure Factors (440 Kb) Retrieve 2GH6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2GH6 from S2C, [Save to disk] Re-refined 2gh6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2GH6 in 3D

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Visual 3D analysis of 2GH6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2GH6, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2gh6_B] [2gh6_D] [2gh6] [2gh6_A] [2gh6_C] SWISS-PROT database: [Q70I53] Domain organization of [HDAH_ALCSD] by SWISSPFAM

Other resources with information on 2GH6

Community annotation for 2GH6 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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