2GLU Structural Genomics, Unknown Function date Apr 05, 2006
title The Crystal Structure Of Ycgj Protein From Bacillus Subitili
authors T.Burke, J.Gorman, L.Shapiro, S.K.Burley, New York Sgx Research For Structural Genomics (Nysgxrc)
compound source
Molecule: Ycgj
Chain: A, B
Engineered: Yes
Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Gene: Ycgj
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Modified Pet
symmetry Space Group: C 2 2 21
R_factor 0.192 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.899 73.639 245.742 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.91 Å
ligand MSE, SAM, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (2glu.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (2glu.pdb2.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 2GLU
  • CSU: Contacts of Structural Units for 2GLU
  • Likely Quarternary Molecular Structure file(s) for 2GLU
  • Structure Factors (305 Kb)
  • Retrieve 2GLU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GLU from S2C, [Save to disk]
  • Re-refined 2glu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2GLU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2GLU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GLU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2glu] [2glu_A] [2glu_B]
  • SWISS-PROT database: [O31474]
  • Domain organization of [YCGJ_BACSU] by SWISSPFAM
  • Other resources with information on 2GLU
  • Community annotation for 2GLU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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