2GTI	Viral Protein	date	Apr 28, 2006
title	Mutation Of Mhv Coronavirus Non-Structural Protein Nsp15 (F3
authors	X.Xu, Y.Zhai, F.Sun, Z.Lou, D.Su, Z.Rao
compound		source
Molecule: Replicase Polyprotein 1ab Chain: A Fragment: P35(Residues 1-369) Synonym: Pp1ab, Orf1ab Polyprotein, Non-Structural Protein Engineered: Yes Mutation: Yes		Organism_scientific: Murine Hepatitis Virus Organism_taxid: 11142 Strain: A59 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: B834 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-6p-1
symmetry	Space Group: P 63 2 2	R_factor 0.229 R_Free 0.248
crystal cell	length a length b length c angle alpha angle beta angle gamma 86.356 86.356 221.103 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.15 Å
ligand	GOL, MSE, SO4	enzyme
Primary reference	New antiviral target revealed by the hexameric structure of mouse hepatitis virus nonstructural protein nsp15., Xu X, Zhai Y, Sun F, Lou Z, Su D, Xu Y, Zhang R, Joachimiak A, Zhang XC, Bartlam M, Rao Z, J Virol. 2006 Aug;80(16):7909-17. PMID:16873248

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk] Biological Unit Coordinates (2gti.pdb1.gz) 360 Kb LPC: Ligand-Protein Contacts for 2GTI CSU: Contacts of Structural Units for 2GTI Likely Quarternary Molecular Structure file(s) for 2GTI Structure Factors (601 Kb) Retrieve 2GTI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2GTI from S2C, [Save to disk] Re-refined 2gti structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2GTI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2GTI

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2GTI, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2gti] [2gti_A] SWISS-PROT database: [Q9J3E8] [P0C6X9] Domain organization of [Q9J3E8_9BETC] [R1AB_CVMA5] by SWISSPFAM

Other resources with information on 2GTI

Community annotation for 2GTI at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---