2GVD	Lyase	date	May 02, 2006
title	Complex Of Gs- With The Catalytic Domains Of Mammalian Adeny Cyclase: Complex With Tnp-Atp And Mn
authors	T.C.Mou, S.R.Sprang
compound		source
Molecule: Adenylate Cyclase Type 5 Chain: A Fragment: C1a Domain, Residues 440-657 Synonym: Adenylate Cyclase Type V, Atp Pyrophosphate-Lyase Adenylyl Cyclase 5, Ca2+, -Inhibitable Adenylyl Cyclase; Ec: 4.6.1.1 Engineered: Yes		Organism_scientific: Canis Lupus Familiaris Organism_common: Dog Organism_taxid: 9615 Strain: Familiaris Gene: Adcy5 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pqe60-H6-Vc1(580)
Molecule: Adenylate Cyclase Type 2 Chain: B Fragment: C2a Domain, Residues 870-1081 Synonym: Adenylate Cyclase Type II, Atp Pyrophosphate-Lyase Adenylyl Cyclase 2; Ec: 4.6.1.1 Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Gene: Adcy2 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pqe60-Iic2
Molecule: Guanine Nucleotide-Binding Protein G(S), Alpha Su Chain: C Synonym: Adenylate Cyclase-Stimulating G Alpha Protein Engineered: Yes		Organism_scientific: Bos Taurus Organism_common: Cattle Organism_taxid: 9913 Gene: Gnas, Gnas1 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pqe60-H6-G(S)Alpha
symmetry	Space Group: P 21 21 2	R_factor 0.245 R_Free 0.279
crystal cell	length a length b length c angle alpha angle beta angle gamma 118.200 133.400 70.600 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	128, CL, FKP, GSP, MN	enzyme	Lyase E.C.4.6.1.1 BRENDA
Gene Ontology	Chain Function Process Component A, B C
Primary reference	Broad Specificity of Mammalian Adenylyl Cyclase for Interaction with 2',3'-Substituted Purine- and Pyrimidine Nucleotide Inhibitors., Mou TC, Gille A, Suryanarayana S, Richter M, Seifert R, Sprang SR, Mol Pharmacol. 2006 Jun 9;. PMID:16766715

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (123 Kb) [Save to disk] Biological Unit Coordinates (2gvd.pdb1.gz) 116 Kb LPC: Ligand-Protein Contacts for 2GVD CSU: Contacts of Structural Units for 2GVD Likely Quarternary Molecular Structure file(s) for 2GVD Structure Factors (178 Kb) Retrieve 2GVD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2GVD from S2C, [Save to disk] Re-refined 2gvd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2GVD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2GVD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2GVD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2gvd_B] [2gvd] [2gvd_A] [2gvd_C] SWISS-PROT database: [P26769] [P30803] [P04896] Domain organization of [ADCY2_RAT] [ADCY5_CANFA] [GNAS2_BOVIN] by SWISSPFAM Domains found in 2GVD: [CYCc] [G_alpha ] by SMART

Other resources with information on 2GVD

Community annotation for 2GVD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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