2GVM Surface Active Protein date May 03, 2006
title Crystal Structure Of Hydrophobin Hfbi With Detergent
authors J.M.Hakanpaa, J.Rouvinen
compound source
Molecule: Hydrophobin-1
Chain: A, B, C, D
Synonym: Hydrophobin I, Hfbi
 Organism_scientific: Hypocrea Jecorina
Organism_taxid: 51453
symmetry Space Group: C 2 2 21
R_factor 0.233 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.900 121.600 121.200 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand LDA, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceTwo crystal structures of Trichoderma reesei hydrophobin HFBI--The structure of a protein amphiphile with and without detergent interaction., Hakanpaa J, Szilvay GR, Kaljunen H, Maksimainen M, Linder M, Rouvinen J, Protein Sci. 2006 Aug 1;. PMID:16882996
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (2gvm.pdb1.gz) 90 Kb
  • Biological Unit Coordinates (2gvm.pdb2.gz) 90 Kb
  • Biological Unit Coordinates (2gvm.pdb3.gz) 90 Kb
  • Biological Unit Coordinates (2gvm.pdb4.gz) 13 Kb
  • Biological Unit Coordinates (2gvm.pdb5.gz) 14 Kb
  • Biological Unit Coordinates (2gvm.pdb6.gz) 12 Kb
  • Biological Unit Coordinates (2gvm.pdb7.gz) 12 Kb
  • LPC: Ligand-Protein Contacts for 2GVM
  • CSU: Contacts of Structural Units for 2GVM
  • Likely Quarternary Molecular Structure file(s) for 2GVM
  • Structure Factors (247 Kb)
  • Retrieve 2GVM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GVM from S2C, [Save to disk]
  • Re-refined 2gvm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2GVM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2GVM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GVM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gvm_C] [2gvm_B] [2gvm_D] [2gvm_A] [2gvm]
  • SWISS-PROT database: [P52754]
  • Domain organization of [HYP1_TRIRE] by SWISSPFAM
    • Other resources with information on 2GVM
  • Community annotation for 2GVM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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