2GVO Rna date May 03, 2006
title Solution Structure Of A Purine Rich Hexaloop Hairpin Belongi Pgymdr1 Mrna And Targeted By Antisense Oligonucleotides
authors F.Joli, N.Bouchemal, A.Laigle, B.Hartmann, E.Hantz
compound source
Molecule: Guanosine-5'-Monophosphate
Chain: A
Engineered: Yes
Other_details: Pgymdr1 Mrna
 Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Homo Sapie (Humans)
methodSolution NMR
Primary referenceSolution structure of a purine rich hexaloop hairpin belonging to PGY/MDR1 mRNA and targeted by antisense oligonucleotides., Joli F, Bouchemal N, Laigle A, Hartmann B, Hantz E, Nucleic Acids Res. 2006;34(20):5740-51. Epub 2006 Oct 13. PMID:17041234
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (208 Kb) [Save to disk]
  • Biological Unit Coordinates (2gvo.pdb1.gz) 10 Kb
  • CSU: Contacts of Structural Units for 2GVO
  • Original NMR restraints for 2GVO from PDB
  • Retrieve 2GVO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GVO from S2C, [Save to disk]
    • View 2GVO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2GVO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GVO, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gvo] [2gvo_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2GVO
  • Community annotation for 2GVO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science