2GYO	Transferase	date	May 09, 2006
title	Methanethiol-Cys 112 Inhibition Complex Of E. Coli Ketoacyl III (Fabh) And Coenzyme A
authors	M.M.Alhamadsheh, F.Musayev, A.A.Komissarov, S.Sachdeva, H.T.Wrig N.Scarsdale, G.Florova, K.A.Reynolds
compound		source
Molecule: 3-Oxoacyl-[Acyl-Carrier-Protein] Synthase 3 Chain: A, B Synonym: 3-Oxoacyl- [Acyl-Carrier-Protein] Synthase III, Be Ketoacyl-Acp Synthase III, Kas III, Ecfabh; Ec: 2.3.1.41 Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Gene: Fabh Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 (De3 Plyse)Plh14 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
symmetry	Space Group: P 21 21 21	R_factor 0.207 R_Free 0.268
crystal cell	length a length b length c angle alpha angle beta angle gamma 64.310 81.910 121.750 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	COA, MEE, SO4	enzyme	Transferase E.C.2.3.1.41 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Alkyl-CoA Disulfides as Inhibitors and Mechanistic Probes for FabH Enzymes., Alhamadsheh MM, Musayev F, Komissarov AA, Sachdeva S, Wright HT, Scarsdale N, Florova G, Reynolds KA, Chem Biol. 2007 May;14(5):513-24. PMID:17524982

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk] Biological Unit Coordinates (2gyo.pdb1.gz) 102 Kb LPC: Ligand-Protein Contacts for 2GYO CSU: Contacts of Structural Units for 2GYO Likely Quarternary Molecular Structure file(s) for 2GYO Structure Factors (317 Kb) Retrieve 2GYO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2GYO from S2C, [Save to disk] Re-refined 2gyo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2GYO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2GYO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2GYO, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2gyo] [2gyo_A] [2gyo_B] SWISS-PROT database: [P0A6R0] Domain organization of [FABH_ECOLI] by SWISSPFAM

Other resources with information on 2GYO

Community annotation for 2GYO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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