2GYQ YcfI, a putative structural protein from Rhodopseudomonas palustris. date
authors Osipiuk, J., Evdokimova, E., Kudritska, M., Savchenko, A., Edwards, A., Joachimiak, A., MCSG, Midwest.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.1757
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.40
ligand ACT, EDO, FE, NA, ZN enzyme
note 2GYQ is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (134 Kb) [Save to disk]
  • Biological Unit Coordinates (2gyq.pdb1.gz) 126 Kb
  • LPC: Ligand-Protein Contacts for 2GYQ
  • CSU: Contacts of Structural Units for 2GYQ
  • Likely Quarternary Molecular Structure file(s) for 2GYQ
  • Structure Factors (627 Kb)
  • Retrieve 2GYQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2GYQ from S2C, [Save to disk]
  • Re-refined 2gyq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2GYQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2GYQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2GYQ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2gyq] [2gyq_A] [2gyq_B]
  • SWISS-PROT database: [Q6N4M9]
  • Domain organization of [Q6N4M9_RHOPA] by SWISSPFAM
    • Other resources with information on 2GYQ
  • Community annotation for 2GYQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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