2H0A Transcription date May 14, 2006
title Crystal Structure Of Probable Transcription Regulator From T Thermophilus
authors T.S.Kumarevel, A.Shinkai, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Transcriptional Regulator
Chain: A
Fragment: Tt1016
Synonym: Ttha0807
Engineered: Yes
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 21 2
R_factor 0.224 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.450 74.450 138.680 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
Primary referenceCrystal structure of TTHA0807, a CcpA regulator, from Thermus thermophilus HB8., Kumarevel T, Tanaka T, Shinkai A, Yokoyama S, Proteins. 2009 Jul 20;77(3):747-751. PMID:19714777
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (2h0a.pdb1.gz) 86 Kb
  • Biological Unit Coordinates (2h0a.pdb2.gz) 43 Kb
  • CSU: Contacts of Structural Units for 2H0A
  • Likely Quarternary Molecular Structure file(s) for 2H0A
  • Structure Factors (265 Kb)
  • Retrieve 2H0A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2H0A from S2C, [Save to disk]
  • Re-refined 2h0a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2H0A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2H0A
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2H0A, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2h0a] [2h0a_A]
  • SWISS-PROT database: [Q5SK45]
  • Domain organization of [Q5SK45_THET8] by SWISSPFAM
  • Other resources with information on 2H0A
  • Community annotation for 2H0A at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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