2H0X Rna date May 15, 2006
title Pre-Cleavage State Of The Thermoanaerobacter Tengcongensis Glms Ribozyme
authors D.J.Klein, A.R.Ferre-D'Amare
compound source
Molecule: Glms Ribozyme Amino Rna Inhibitor
Chain: A
Engineered: Yes
 Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Thermoanaerobacter Tengcongensis;

Molecule: Glms Ribozyme Rna
Chain: B
Engineered: Yes
Synthetic: Yes
Other_details: Rna Produced By In Vitro Transcription. This Sequence Occurs Naturally In Thermoanaerobacter Tengcongensis
symmetry Space Group: P 21 21 2
R_factor 0.210 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
180.599 39.742 70.669 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand 2AD, A23, MG enzyme
Primary referenceStructural basis of glmS ribozyme activation by glucosamine-6-phosphate., Klein DJ, Ferre-D'Amare AR, Science. 2006 Sep 22;313(5794):1752-6. PMID:16990543
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (2h0x.pdb1.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 2H0X
  • CSU: Contacts of Structural Units for 2H0X
  • Likely Quarternary Molecular Structure file(s) for 2H0X
  • Structure Factors (186 Kb)
  • Retrieve 2H0X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2H0X from S2C, [Save to disk]
  • Re-refined 2h0x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2H0X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2H0X
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2H0X, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2h0x_B] [2h0x] [2h0x_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2H0X
  • Community annotation for 2H0X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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