2H41 Cell Adhesion, Structural Protein date May 23, 2006
title Solution Structure Of The Second Type III Domain Of Human Fi Minimized Average Structure
authors I.Vakonakis, I.D.Campbell
compound source
Molecule: Fibronectin
Chain: A
Fragment: Fibronectin Type-III 2(2f3)
Synonym: Fn, Cold-Insoluble Globulin, Cig
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fn1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-Rp
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-2
methodSolution NMR
Primary referenceInterdomain association in fibronectin: insight into cryptic sites and fibrillogenesis., Vakonakis I, Staunton D, Rooney LM, Campbell ID, EMBO J. 2007 May 16;26(10):2575-83. Epub 2007 Apr 26. PMID:17464288
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (2h41.pdb1.gz) 26 Kb
  • CSU: Contacts of Structural Units for 2H41
  • Original NMR restraints for 2H41 from PDB
  • Retrieve 2H41 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2H41 from S2C, [Save to disk]
    • View 2H41 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2H41
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2H41, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2h41_A] [2h41]
  • SWISS-PROT database: [P02751]
  • Domain organization of [FINC_HUMAN] by SWISSPFAM
  • Domain found in 2H41: [FN3 ] by SMART
    • Other resources with information on 2H41
  • Community annotation for 2H41 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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