2H79 Hormone Growth Factor date Jun 01, 2006
title Crystal Structure Of Human Tr Alpha Bound T3 In Orthorhombic Group
authors A.S.Nascimento, S.M.G.Dias, F.M.Nunes, R.Aparicio, L.Bleicher, A.L.B.Ambrosio, A.C.M.Figueira, M.A.M.Santos, M.O.Neto, H.Fisch H.F.M.Togashi, A.F.Craievich, R.C.Garrat, J.D.Baxter, P.Webb, I.Polikarpov
compound source
Molecule: Thra Protein
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Thra
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bls21 (De3)
Expression_system_vector_type: T7
Expression_system_plasmid: Pet28a
symmetry Space Group: P 21 21 21
R_factor 0.149 R_Free 0.187
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.981 80.795 102.211 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.87 Å
ligand CAS, T3 BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural rearrangements in the thyroid hormone receptor hinge domain and their putative role in the receptor function., Nascimento AS, Dias SM, Nunes FM, Aparicio R, Ambrosio AL, Bleicher L, Figueira AC, Santos MA, Neto Mde O, Fischer H, Togashi M, Craievich AF, Garratt RC, Baxter JD, Webb P, Polikarpov I, J Mol Biol. 2006 Jul 14;360(3):586-98. Epub 2006 May 19. PMID:16781732
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (2h79.pdb1.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 2H79
  • CSU: Contacts of Structural Units for 2H79
  • Likely Quarternary Molecular Structure file(s) for 2H79
  • Retrieve 2H79 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2H79 from S2C, [Save to disk]
  • View 2H79 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2H79
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2H79, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2h79_A] [2h79]
  • SWISS-PROT database: [Q6FH41] [P10827]
  • Domain organization of [Q6FH41_HUMAN] [THA_HUMAN] by SWISSPFAM
  • Domain found in 2H79: [HOLI ] by SMART
  • Other resources with information on 2H79
  • Community annotation for 2H79 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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