2H89	Oxidoreductase	date	Jun 06, 2006
title	Avian Respiratory Complex II With Malonate Bound
authors	L.S.Huang, J.T.Shen, A.C.Wang, E.A.Berry
compound		source
Molecule: Succinate Dehydrogenase Flavoprotein Subunit Chain: A Ec: 1.3.5.1		Organism_scientific: Gallus Gallus Organism_common: Chicken Organism_taxid: 9031
Molecule: Succinate Dehydrogenase Ip Subunit Chain: B Ec: 1.3.5.1		Organism_scientific: Gallus Gallus Organism_common: Chicken Organism_taxid: 9031
Molecule: Succinate Dehydrogenase Cytochrome B, Large Subun Chain: C Ec: 1.3.5.1		Organism_scientific: Gallus Gallus Organism_common: Chicken Organism_taxid: 9031
Molecule: Succinate Dehydrogenase Cytochrome B, Small Subun Chain: D Ec: 1.3.5.1		Organism_scientific: Gallus Gallus Organism_common: Chicken Organism_taxid: 9031
symmetry	Space Group: P 21 21 21	R_factor 0.226 R_Free 0.279
crystal cell	length a length b length c angle alpha angle beta angle gamma 70.520 84.118 292.212 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	BHG, F3S, FAD, FES, HEM, K, MLI, PEE, SF4, UNL	enzyme	Oxidoreductase E.C.1.3.5.1 BRENDA
Gene Ontology	Chain Function Process Component A mitochondrial respiratory ch... B C electron transfer activity D
Primary reference	Crystallographic studies of the binding of ligands to the dicarboxylate site of Complex II, and the identity of the ligand in the "oxaloacetate-inhibited" state., Huang LS, Shen JT, Wang AC, Berry EA, Biochim Biophys Acta. 2006 Sep-Oct;1757(9-10):1073-83. Epub 2006 Jul 12. PMID:16935256

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk] Biological Unit Coordinates (2h89.pdb1.gz) 188 Kb LPC: Ligand-Protein Contacts for 2H89 CSU: Contacts of Structural Units for 2H89 Likely Quarternary Molecular Structure file(s) for 2H89 Structure Factors (534 Kb) Retrieve 2H89 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2H89 from S2C, [Save to disk] Re-refined 2h89 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2H89 in 3D

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Visual 3D analysis of 2H89

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2H89, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2h89_D] [2h89] [2h89_C] [2h89_B] [2h89_A] SWISS-PROT database: [D0VWW3] [Q9YHT1] [Q9YHT2] [Q5ZIS0] Domain organization of [D0VWW3_CHICK] [DHSA_CHICK] [DHSB_CHICK] [DHSD_CHICK] by SWISSPFAM

Other resources with information on 2H89

Community annotation for 2H89 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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