2H8R	Transcription Activator Dna	date	Jun 07, 2006
title	Hepatocyte Nuclear Factor 1b Bound To Dna: Mody5 Gene Produc
authors	P.Lu, G.B.Rha, Y.I.Chi
compound		source
Molecule: 5'-D(Cptptpgpgptptpapaptpapaptptpc Apg)-3'; Chain: E Engineered: Yes		Synthetic: Yes
Molecule: 5'-D(Gpcptpgpgptpgpapaptptpaptptpa Apa)-3'; Chain: F Engineered: Yes		Synthetic: Yes
Molecule: Hepatocyte Nuclear Factor 1-Beta Chain: A, B Fragment: Dna Binding Domain (Residues 91-310) Synonym: Hnf-1beta, Hnf-1b, Variant Hepatic Nuclear Factor Homeoprotein Lfb3, Transcription Factor 2, Tcf-2; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet41a
symmetry	Space Group: H 3	R_factor 0.223 R_Free 0.290
crystal cell	length a length b length c angle alpha angle beta angle gamma 174.689 174.689 72.434 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.20 Å
note	2H8R is a representative structure
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural basis of disease-causing mutations in hepatocyte nuclear factor 1beta., Lu P, Rha GB, Chi YI, Biochemistry. 2007 Oct 30;46(43):12071-80. Epub 2007 Oct 9. PMID:17924661

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk] Biological Unit Coordinates (2h8r.pdb1.gz) 75 Kb CSU: Contacts of Structural Units for 2H8R Likely Quarternary Molecular Structure file(s) for 2H8R Structure Factors (259 Kb) Retrieve 2H8R in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2H8R from S2C, [Save to disk] Re-refined 2h8r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2H8R in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2H8R

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2H8R, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2h8r_E] [2h8r_F] [2h8r_A] [2h8r_B] [2h8r] SWISS-PROT database: [P35680] Domain organization of [HNF1B_HUMAN] by SWISSPFAM Domain found in 2H8R: [HOX ] by SMART

Other resources with information on 2H8R

Community annotation for 2H8R at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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