2HEL Signaling Protein, Transferase date Jun 21, 2006
title Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a)
authors L.E.Wybenga-Groot, F.Sicheri, T.Pawson
compound source
Molecule: Eph Receptor A4
Chain: A
Fragment: Juxtamembrane And Kinase Domain
Engineered: Yes
Mutation: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Epha4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.209 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
32.283 101.081 40.950 90.00 108.80 90.00
method X-Ray Diffractionresolution 2.35 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA change in conformational dynamics underlies the activation of Eph receptor tyrosine kinases., Wiesner S, Wybenga-Groot LE, Warner N, Lin H, Pawson T, Forman-Kay JD, Sicheri F, EMBO J. 2006 Oct 4;25(19):4686-96. Epub 2006 Sep 14. PMID:16977320
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (2hel.pdb1.gz) 40 Kb
  • CSU: Contacts of Structural Units for 2HEL
  • Likely Quarternary Molecular Structure file(s) for 2HEL
  • Structure Factors (141 Kb)
  • Retrieve 2HEL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HEL from S2C, [Save to disk]
  • Re-refined 2hel structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HEL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HEL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HEL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hel_A] [2hel]
  • SWISS-PROT database: [Q03137] [Q80VZ2]
  • Domain organization of [EPHA4_MOUSE] [Q80VZ2_MOUSE] by SWISSPFAM
  • Domain found in 2HEL: [TyrKc ] by SMART
  • Other resources with information on 2HEL
  • Community annotation for 2HEL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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