2HFR Antimicrobial Protein date Jun 26, 2006
title Solution Structure Of Antimicrobial Peptide Fowlicidin 3
authors Y.R.Bommineni, H.Dai, Y.Gong, O.Prakash, G.Zhang
compound source
Molecule: Fowlicidin-3
Chain: A
Fragment: Residues 125-151
Synonym: Cathelicidin
Engineered: Yes
 Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Gallus Gal (Chicken).
methodSolution NMR
Primary referenceFowlicidin-3 is an alpha-helical cationic host defense peptide with potent antibacterial and lipopolysaccharide-neutralizing activities., Bommineni YR, Dai H, Gong YX, Soulages JL, Fernando SC, Desilva U, Prakash O, Zhang G, FEBS J. 2007 Jan;274(2):418-28. PMID:17229147
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (155 Kb) [Save to disk]
  • Biological Unit Coordinates (2hfr.pdb1.gz) 8 Kb
  • CSU: Contacts of Structural Units for 2HFR
  • Original NMR restraints for 2HFR from PDB
  • Retrieve 2HFR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HFR from S2C, [Save to disk]
    • View 2HFR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2HFR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HFR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hfr] [2hfr_A]
  • SWISS-PROT database: [Q2IAL6]
  • Domain organization of [CTHL3_CHICK] by SWISSPFAM
    • Other resources with information on 2HFR
  • Community annotation for 2HFR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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