2HI5 Virus date Jun 29, 2006
title Model For Bacteriophage Fd From Cryo-Em
authors Y.A.Wang, X.Yu, S.Overman, M.Tsuboi, G.J.Thomas, E.H.Egelman
compound source
Molecule: Coat Protein B
Chain: A
Synonym: Major Coat Protein
Engineered: Yes
 Organism_scientific: Enterobacteria Phage Fd
Organism_taxid: 10864
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 8.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe structure of a filamentous bacteriophage., Wang YA, Yu X, Overman S, Tsuboi M, Thomas GJ Jr, Egelman EH, J Mol Biol. 2006 Aug 11;361(2):209-15. Epub 2006 Jun 30. PMID:16843489
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (10 Kb) [Save to disk]
  • Biological Unit Coordinates (2hi5.pdb1.gz) 178 Kb
  • CSU: Contacts of Structural Units for 2HI5
  • Retrieve 2HI5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HI5 from S2C, [Save to disk]
    • View 2HI5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2HI5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HI5, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hi5_A] [2hi5]
  • SWISS-PROT database: [P69539]
  • Domain organization of [CAPSD_BPFD] by SWISSPFAM
    • Other resources with information on 2HI5
  • Community annotation for 2HI5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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