2HJ9 Signaling Protein date Jun 30, 2006
title Crystal Structure Of The Autoinducer-2-Bound Form Of Vibrio Luxp Complexed With The Periplasmic Domain Of Luxq
authors M.B.Neiditch, F.M.Hughson
compound source
Molecule: Autoinducer 2-Binding Periplasmic Protein Luxp
Chain: A, B
Engineered: Yes
Organism_scientific: Vibrio Harveyi
Organism_taxid: 669
Gene: Luxp
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t-1

Molecule: Autoinducer 2 Sensor Kinasephosphatase Luxq
Chain: C, D
Fragment: Periplasmic Domain (Residues 53-271)
Ec: 3.1.3.-
Engineered: Yes

Organism_scientific: Vibrio Harveyi
Organism_taxid: 669
Gene: Luxq
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t-1
symmetry Space Group: P 43 21 2
R_factor 0.207 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.916 83.916 365.328 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.34 Å
ligand AI2 enzyme Hydrolase E.C.3.1.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C


Primary referenceLigand-induced asymmetry in histidine sensor kinase complex regulates quorum sensing., Neiditch MB, Federle MJ, Pompeani AJ, Kelly RC, Swem DL, Jeffrey PD, Bassler BL, Hughson FM, Cell. 2006 Sep 22;126(6):1095-108. PMID:16990134
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (186 Kb) [Save to disk]
  • Biological Unit Coordinates (2hj9.pdb1.gz) 180 Kb
  • LPC: Ligand-Protein Contacts for 2HJ9
  • CSU: Contacts of Structural Units for 2HJ9
  • Likely Quarternary Molecular Structure file(s) for 2HJ9
  • Structure Factors (421 Kb)
  • Retrieve 2HJ9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HJ9 from S2C, [Save to disk]
  • Re-refined 2hj9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2HJ9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2HJ9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HJ9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hj9_C] [2hj9] [2hj9_B] [2hj9_D] [2hj9_A]
  • SWISS-PROT database: [P54300] [P54302]
  • Domain organization of [LUXP_VIBHA] [LUXQ_VIBHA] by SWISSPFAM
  • Other resources with information on 2HJ9
  • Community annotation for 2HJ9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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