2HO1 Protein Binding date Jul 13, 2006
title Functional Characterization Of Pseudomonas Aeruginosa Pilf
authors J.Koo
compound source
Molecule: Type 4 Fimbrial Biogenesis Protein Pilf
Chain: A, B
Engineered: Yes
 Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 208964
Strain: Pao1
Gene: Pilf
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28a
symmetry Space Group: P 21 21 2
R_factor 0.209 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
137.099 69.047 70.126 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand MSE enzyme
Primary referencePilF is an outer membrane lipoprotein required for multimerization and localization of the Pseudomonas aeruginosa Type IV pilus secretin., Koo J, Tammam S, Ku SY, Sampaleanu LM, Burrows LL, Howell PL, J Bacteriol. 2008 Nov;190(21):6961-9. Epub 2008 Sep 5. PMID:18776008
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (2ho1.pdb1.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 2HO1
  • CSU: Contacts of Structural Units for 2HO1
  • Likely Quarternary Molecular Structure file(s) for 2HO1
  • Structure Factors (1825 Kb)
  • Retrieve 2HO1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HO1 from S2C, [Save to disk]
  • Re-refined 2ho1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2HO1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2HO1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HO1, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ho1_A] [2ho1_B] [2ho1]
  • SWISS-PROT database: [Q9HXJ2]
  • Domain organization of [Q9HXJ2_PSEAE] by SWISSPFAM
  • Domain found in 2HO1: [TPR ] by SMART
    • Other resources with information on 2HO1
  • Community annotation for 2HO1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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