2HPS Luminescent Protein date Jul 17, 2006
title Crystal Structure Of Coelenterazine-Binding Protein From Ren Muelleri
authors G.Stepanyuk, Z.J.Liu, E.S.Vysotski, J.Lee, J.P.Rose, B.C.Wang, Sou Collaboratory For Structural Genomics (Secsg)
compound source
Molecule: Coelenterazine-Binding Protein With Bound Coelent
Chain: A
Engineered: Yes
 Organism_scientific: Renilla Muelleri
Organism_taxid: 37510
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
symmetry Space Group: P 65 2 2
R_factor 0.199 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.948 55.948 292.202 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.72 Å
ligand CTZ, GOL, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of coelenterazine-binding protein from Renilla muelleri at 1.7 A: why it is not a calcium-regulated photoprotein., Stepanyuk GA, Liu ZJ, Markova SS, Frank LA, Lee J, Vysotski ES, Wang BC, Photochem Photobiol Sci. 2008 Apr;7(4):442-7. Epub 2008 Feb 19. PMID:18385886
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (2hps.pdb1.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 2HPS
  • CSU: Contacts of Structural Units for 2HPS
  • Likely Quarternary Molecular Structure file(s) for 2HPS
  • Structure Factors (254 Kb)
  • Retrieve 2HPS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HPS from S2C, [Save to disk]
  • Re-refined 2hps structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2HPS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2HPS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HPS, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hps] [2hps_A]
  • SWISS-PROT database: [C9V488] [P05938]
  • Domain organization of [C9V488_RENMU] [LBP_RENRE] by SWISSPFAM
  • Domain found in 2HPS: [EFh ] by SMART
    • Other resources with information on 2HPS
  • Community annotation for 2HPS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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