2HYF Transcription date Aug 06, 2006
title The Structure Of Apo-Mntr From Bacillus Subtilis, Selenomethionine Derivative
authors A.Glasfeld
compound source
Molecule: Transcriptional Regulator Mntr
Chain: A, B, C, D
Synonym: Manganese Transport Regulator
 Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
symmetry Space Group: P 21 21 21
R_factor 0.217 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.890 65.030 186.970 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand EPE, MSE, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceThe Conformations of the Manganese Transport Regulator of Bacillus subtilis in its Metal-free State., Dewitt MA, Kliegman JI, Helmann JD, Brennan RG, Farrens DL, Glasfeld A, J Mol Biol. 2007 Feb 2;365(5):1257-65. Epub 2006 Oct 28. PMID:17118401
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (2hyf.pdb1.gz) 46 Kb
  • Biological Unit Coordinates (2hyf.pdb2.gz) 48 Kb
  • Biological Unit Coordinates (2hyf.pdb3.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 2HYF
  • CSU: Contacts of Structural Units for 2HYF
  • Likely Quarternary Molecular Structure file(s) for 2HYF
  • Structure Factors (123 Kb)
  • Retrieve 2HYF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2HYF from S2C, [Save to disk]
  • Re-refined 2hyf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2HYF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2HYF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2HYF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2hyf_C] [2hyf_A] [2hyf] [2hyf_D] [2hyf_B]
  • SWISS-PROT database: [P54512]
  • Domain organization of [MNTR_BACSU] by SWISSPFAM
  • Domain found in 2HYF: [HTH_DTXR ] by SMART
    • Other resources with information on 2HYF
  • Community annotation for 2HYF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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