2I37 Membrane Protein date Aug 17, 2006
title Crystal Structure Of A Photoactivated Rhodopsin
authors D.T.Lodowski, R.E.Stenkamp, D.Salom, I.Le Trong, K.Palczewski
compound source
Molecule: Rhodopsin
Chain: A, B, C
 Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
symmetry Space Group: P 31 1 2
R_factor 0.377 R_Free 0.382
crystal
cell
length a length b length c angle alpha angle beta angle gamma
161.245 161.245 143.442 90.00 90.00 120.00
method X-Ray Diffractionresolution 4.15 Å
ligand ACE, BMA, MAN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceCrystal structure of a photoactivated deprotonated intermediate of rhodopsin., Salom D, Lodowski DT, Stenkamp RE, Trong IL, Golczak M, Jastrzebska B, Harris T, Ballesteros JA, Palczewski K, Proc Natl Acad Sci U S A. 2006 Oct 31;103(44):16123-8. Epub 2006 Oct 23. PMID:17060607
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (2i37.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (2i37.pdb2.gz) 46 Kb
  • Biological Unit Coordinates (2i37.pdb3.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 2I37
  • CSU: Contacts of Structural Units for 2I37
  • Likely Quarternary Molecular Structure file(s) for 2I37
  • Structure Factors (113 Kb)
  • Retrieve 2I37 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2I37 from S2C, [Save to disk]
  • Re-refined 2i37 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2I37 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2I37
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2I37, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2i37_B] [2i37_C] [2i37] [2i37_A]
  • SWISS-PROT database: [P02699]
  • Domain organization of [OPSD_BOVIN] by SWISSPFAM
    • Other resources with information on 2I37
  • Community annotation for 2I37 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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