2I61 Toxin date Aug 27, 2006
title Depressant Anti-Insect Neurotoxin, Lqhit2 From Leiurus Quinq Hebraeus
authors F.Frolow, M.Gurevitz, I.Karbat, M.Turkov, D.Gordon
compound source
Molecule: Insect Toxin 2
Chain: A
Fragment: Peptide Modifier Of Voltage-Gated Sodium Channels
Synonym: Lqh It2, Lqhit2, Lqhit2-44, Anti-Insect Depressant Neurotoxin;
Engineered: Yes
Organism_scientific: Leiurus Quinquestriatus Hebraeus
Organism_taxid: 6884
Strain: Hebraeus
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11c
symmetry Space Group: P 1 21 1
R_factor 0.096 R_Free 0.120
crystal
cell
length a length b length c angle alpha angle beta angle gamma
19.660 51.423 28.917 90.00 107.75 90.00
method X-Ray Diffractionresolution 1.20 Å
ligand ACY, CO2, EDO, LI, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • toxin activity


  • Primary referenceX-ray Structure and Mutagenesis of the Scorpion Depressant Toxin LqhIT2 Reveals Key Determinants Crucial for Activity and Anti-Insect Selectivity., Karbat I, Turkov M, Cohen L, Kahn R, Gordon D, Gurevitz M, Frolow F, J Mol Biol. 2006 Nov 10;. PMID:17166514
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (2i61.pdb1.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 2I61
  • CSU: Contacts of Structural Units for 2I61
  • Likely Quarternary Molecular Structure file(s) for 2I61
  • Structure Factors (104 Kb)
  • Retrieve 2I61 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2I61 from S2C, [Save to disk]
  • Re-refined 2i61 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2I61 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2I61
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2I61, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2i61_A] [2i61]
  • SWISS-PROT database: [Q26292]
  • Domain organization of [SIX2_LEIQH] by SWISSPFAM
  • Domain found in 2I61: [Knot1 ] by SMART
  • Other resources with information on 2I61
  • Community annotation for 2I61 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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