2I9E Isomerase date Sep 05, 2006
title Structure Of Triosephosphate Isomerase Of Tenebrio Molitor
authors A.Schmidt, P.Scheerer, H.Wessner, W.Hoehne, N.Krauss
compound source
Molecule: Triosephosphate Isomerase
Chain: A, B, C, D
Ec: 5.3.1.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Tenebrio Molitor
Organism_common: Yellow Mealworm
Organism_taxid: 7067
Gene: Tpi
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Shpet9aj6
symmetry Space Group: P 1 21 1
R_factor 0.219 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.060 145.080 94.280 90.00 95.61 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand TRS enzyme Isomerase E.C.5.3.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceA coleopteran triosephosphate isomerase: X-ray structure and phylogenetic impact of insect sequences., Knobeloch D, Schmidt A, Scheerer P, Krauss N, Wessner H, Scholz C, Kuttner G, von Rintelen T, Wessel A, Hohne W, Insect Mol Biol. 2009 Oct 22. PMID:19849721
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk]
  • Biological Unit Coordinates (2i9e.pdb1.gz) 80 Kb
  • Biological Unit Coordinates (2i9e.pdb2.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 2I9E
  • CSU: Contacts of Structural Units for 2I9E
  • Likely Quarternary Molecular Structure file(s) for 2I9E
  • Structure Factors (591 Kb)
  • Retrieve 2I9E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2I9E from S2C, [Save to disk]
  • Re-refined 2i9e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2I9E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2I9E
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2I9E, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2i9e] [2i9e_B] [2i9e_D] [2i9e_A] [2i9e_C]
  • SWISS-PROT database: [Q8MPF2]
  • Domain organization of [Q8MPF2_TENMO] by SWISSPFAM
  • Other resources with information on 2I9E
  • Community annotation for 2I9E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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