2ID8 Hydrolase date Sep 14, 2006
title Crystal Structure Of Proteinase K
authors J.Wang, M.Dauter, Z.Dauter
compound source
Molecule: Proteinase K
Chain: A
Synonym: Tritirachium Alkaline Proteinase, Endopeptidase K
Ec: 3.4.21.64
 Organism_scientific: Engyodontium Album
Organism_taxid: 37998
symmetry Space Group: P 43 21 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.550 67.550 106.880 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.27 Å
ligand 2DB, CA, CL, NO3 enzyme Hydrolase E.C.3.4.21.64 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceWhat can be done with a good crystal and an accurate beamline?, Wang J, Dauter M, Dauter Z, Acta Crystallogr D Biol Crystallogr. 2006 Dec;62(Pt 12):1475-83. Epub 2006, Nov 23. PMID:17139083
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (2id8.pdb1.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 2ID8
  • CSU: Contacts of Structural Units for 2ID8
  • Likely Quarternary Molecular Structure file(s) for 2ID8
  • Structure Factors (932 Kb)
  • Retrieve 2ID8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ID8 from S2C, [Save to disk]
  • Re-refined 2id8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2ID8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2ID8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ID8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2id8_A] [2id8]
  • SWISS-PROT database: [P06873]
  • Domain organization of [PRTK_TRIAL] by SWISSPFAM
    • Other resources with information on 2ID8
  • Community annotation for 2ID8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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