2IIC Metal Binding Protein date Sep 27, 2006
title Calcium Bound Structure Of Alpha-11 Giardin
authors P.Pathuri, E.T.Nguyen, H.Luecke
compound source
Molecule: Alpha-11 Giardin
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Giardia Intestinalis
Organism_taxid: 5741
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p3
symmetry Space Group: P 1 21 1
R_factor 0.264 R_Free 0.306
crystal
cell
length a length b length c angle alpha angle beta angle gamma
129.300 45.285 131.901 90.00 116.39 90.00
method X-Ray Diffractionresolution 2.93 Å
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceApo and Calcium-bound Crystal Structures of Alpha-11 Giardin, an Unusual Annexin from Giardia lamblia., Pathuri P, Nguyen ET, Svard SG, Luecke H, J Mol Biol. 2007 Apr 27;368(2):493-508. Epub 2007 Feb 20. PMID:17355882
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (198 Kb) [Save to disk]
  • Biological Unit Coordinates (2iic.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (2iic.pdb2.gz) 50 Kb
  • Biological Unit Coordinates (2iic.pdb3.gz) 50 Kb
  • Biological Unit Coordinates (2iic.pdb4.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 2IIC
  • CSU: Contacts of Structural Units for 2IIC
  • Likely Quarternary Molecular Structure file(s) for 2IIC
  • Structure Factors (226 Kb)
  • Retrieve 2IIC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2IIC from S2C, [Save to disk]
  • Re-refined 2iic structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2IIC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2IIC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2IIC, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2iic_A] [2iic_D] [2iic_B] [2iic] [2iic_C]
  • SWISS-PROT database: [Q4VPP2]
  • Domain organization of [Q4VPP2_GIALA] by SWISSPFAM
    • Other resources with information on 2IIC
  • Community annotation for 2IIC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science