2ISC Transferase date Oct 17, 2006
title Crystal Structure Of Purine Nucleoside Phosphorylase From Tr Vaginalis With Dadme-Imm-A
authors A.Rinaldo-Matthis, S.C.Almo, V.L.Schramm
compound source
Molecule: Purine Nucleoside Phosphorylase
Chain: A, B, C, D, E, F
Synonym: Pnp
Ec: 2.4.2.1
Engineered: Yes
Organism_scientific: Trichomonas Vaginalis
Organism_taxid: 5722
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 21
R_factor 0.199 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.402 113.821 195.149 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand 223, PO4 enzyme Transferase E.C.2.4.2.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceInhibition and structure of Trichomonas vaginalis purine nucleoside phosphorylase with picomolar transition state analogues., Rinaldo-Matthis A, Wing C, Ghanem M, Deng H, Wu P, Gupta A, Tyler PC, Evans GB, Furneaux RH, Almo SC, Wang CC, Schramm VL, Biochemistry. 2007 Jan 23;46(3):659-68. PMID:17223688
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (223 Kb) [Save to disk]
  • Biological Unit Coordinates (2isc.pdb1.gz) 217 Kb
  • LPC: Ligand-Protein Contacts for 2ISC
  • CSU: Contacts of Structural Units for 2ISC
  • Likely Quarternary Molecular Structure file(s) for 2ISC
  • Structure Factors (426 Kb)
  • Retrieve 2ISC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ISC from S2C, [Save to disk]
  • Re-refined 2isc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ISC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ISC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ISC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2isc] [2isc_B] [2isc_C] [2isc_D] [2isc_F] [2isc_E] [2isc_A]
  • SWISS-PROT database: [A2E7Y6]
  • Domain organization of [A2E7Y6_TRIVA] by SWISSPFAM
  • Other resources with information on 2ISC
  • Community annotation for 2ISC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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