2J04 Transcription date Jul 31, 2006
title The Tau60-Tau91 Subcomplex Of Yeast Transcription Factor III
authors A.Mylona, C.Fernandez-Tornero, P.Legrand, C.W.Muller
compound source
Molecule: Hypothetical Protein Ypl007c
Chain: A, C
Synonym: Tau60, Ypl007p
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: High Five
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pvl1393

Molecule: Ydr362cp
Chain: B, D
Fragment: Propeller Domain, Residues 159-672
Synonym: Tau91
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_plasmid: Pet-28a
symmetry Space Group: P 1 21 1
R_factor 0.212 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.420 125.800 210.470 90.00 94.49 90.00
method X-Ray Diffractionresolution 3.20 Å
note 2J04 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceStructure of the tau60/Delta tau91 subcomplex of yeast transcription factor IIIC: insights into preinitiation complex assembly., Mylona A, Fernandez-Tornero C, Legrand P, Haupt M, Sentenac A, Acker J, Muller CW, Mol Cell. 2006 Oct 20;24(2):221-32. PMID:17052456
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (329 Kb) [Save to disk]
  • Biological Unit Coordinates (2j04.pdb1.gz) 164 Kb
  • Biological Unit Coordinates (2j04.pdb2.gz) 163 Kb
  • CSU: Contacts of Structural Units for 2J04
  • Likely Quarternary Molecular Structure file(s) for 2J04
  • Structure Factors (400 Kb)
  • Retrieve 2J04 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J04 from S2C, [Save to disk]
  • Re-refined 2j04 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2J04 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2J04
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2J04, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j04_A] [2j04_D] [2j04_C] [2j04] [2j04_B]
  • SWISS-PROT database: [Q06339] [Q12308]
  • Domain organization of [TFC6_YEAST] [TFC8_YEAST] by SWISSPFAM
  • Other resources with information on 2J04
  • Community annotation for 2J04 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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