2J14 Transcription date Aug 08, 2006
title 3,4,5-Trisubstituted Isoxazoles As Novel Ppardelta Agonists:
authors R.Epple, M.Azimioara, R.Russo, Y.Xie, X.Wang, C.Cow, J.Wityak, D.Ka B.Bursulaya, A.Kreusch, T.Tuntland, A.Gerken, M.Iskandar, E.Saez H.M.Seidel, S.S.Tian
compound source
Molecule: Peroxisome Proliferator-Activated Receptor Delta
Chain: A, B
Fragment: Ligand Binding Domain, Residues 165-441
Synonym: Ppar-Delta, Ppar-Beta, Nuclear Hormone Receptor 1, Nuci, Ppardelta;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.224 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.376 93.390 92.258 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand GNI BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary reference3,4,5-Trisubstituted isoxazoles as novel PPARdelta agonists. Part 2., Epple R, Azimioara M, Russo R, Xie Y, Wang X, Cow C, Wityak J, Karanewsky D, Bursulaya B, Kreusch A, Tuntland T, Gerken A, Iskandar M, Saez E, Martin Seidel H, Tian SS, Bioorg Med Chem Lett. 2006 Nov 1;16(21):5488-92. Epub 2006 Aug 22. PMID:16931011
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk]
  • Biological Unit Coordinates (2j14.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (2j14.pdb2.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 2J14
  • CSU: Contacts of Structural Units for 2J14
  • Likely Quarternary Molecular Structure file(s) for 2J14
  • Retrieve 2J14 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J14 from S2C, [Save to disk]
  • View 2J14 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2J14
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2J14, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j14_A] [2j14_B] [2j14]
  • SWISS-PROT database: [Q03181]
  • Domain organization of [PPARD_HUMAN] by SWISSPFAM
  • Domain found in 2J14: [HOLI ] by SMART
  • Other resources with information on 2J14
  • Community annotation for 2J14 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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