2J16 Hydrolase date Aug 09, 2006
title Apo & Sulphate Bound Forms Of Sdp-1
authors D.C.Briggs, N.Q.Mcdonald
compound source
Molecule: Tyrosine-Protein Phosphatase Yil113w
Chain: A
Fragment: Residues 17-198
Synonym: Sdp-1
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Strain: S288c Ab972
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Fb810
Expression_system_variant: Plyss
Expression_system_plasmid: Pet14b

Molecule: Tyrosine-Protein Phosphatase Yil113w
Chain: B
Fragment: Residues 17-198
Synonym: Sdp-1
Ec: 3.1.3.48
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Strain: S288c Ab972
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Fb810
Expression_system_variant: Plyss
Expression_system_plasmid: Pet14b
symmetry Space Group: P 41 21 2
R_factor 0.230 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.342 77.342 152.885 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand CSD, MG, SO4 enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceRedox-mediated substrate recognition by Sdp1 defines a new group of tyrosine phosphatases., Fox GC, Shafiq M, Briggs DC, Knowles PP, Collister M, Didmon MJ, Makrantoni V, Dickinson RJ, Hanrahan S, Totty N, Stark MJ, Keyse SM, McDonald NQ, Nature. 2007 May 24;447(7143):487-92. Epub 2007 May 9. PMID:17495930
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (2j16.pdb1.gz) 23 Kb
  • Biological Unit Coordinates (2j16.pdb2.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 2J16
  • CSU: Contacts of Structural Units for 2J16
  • Likely Quarternary Molecular Structure file(s) for 2J16
  • Structure Factors (178 Kb)
  • Retrieve 2J16 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J16 from S2C, [Save to disk]
  • Re-refined 2j16 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2J16 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2J16
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2J16, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j16_B] [2j16] [2j16_A]
  • SWISS-PROT database: [P40479]
  • Domain organization of [SDP1_YEAST] by SWISSPFAM
  • Domain found in 2J16: [DSPc ] by SMART
  • Other resources with information on 2J16
  • Community annotation for 2J16 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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