2J8J Hydrolase date Oct 25, 2006
title Solution Structure Of The A4 Domain Of Blood Coagulation Factor Xi
authors D.Samuel, H.Cheng, P.W.Riley, A.A.Canutescu, Z.Bu, P.N.Walsh, H.Roder
compound source
Molecule: Coagulation Factor Xi
Chain: A, B
Fragment: Apple 4 Domain, Residues 290-379
Synonym: Plasma Thromboplastin Antecedent, Pta, Fxi, Factor Xi;
Ec: 3.4.21.27
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.4.21.27 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceSolution structure of the A4 domain of factor XI sheds light on the mechanism of zymogen activation., Samuel D, Cheng H, Riley PW, Canutescu AA, Nagaswami C, Weisel JW, Bu Z, Walsh PN, Roder H, Proc Natl Acad Sci U S A. 2007 Sep 20;. PMID:17884987
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (569 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2J8J
  • Retrieve 2J8J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J8J from S2C, [Save to disk]
    • View 2J8J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2J8J
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2J8J, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j8j_A] [2j8j] [2j8j_B]
  • SWISS-PROT database: [P03951]
  • Domain organization of [FA11_HUMAN] by SWISSPFAM
  • Domain found in 2J8J: [APPLE ] by SMART
    • Other resources with information on 2J8J
  • Community annotation for 2J8J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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  • Images from IMB Jena Image Library of Biological Macromolecules.

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