2JB2 Oxidoreductase date Dec 01, 2006
title The Structure Of L-Amino Acid Oxidase From Rhodococcus Opacu Complex With L-Phenylalanine.
authors A.Faust, K.Niefind, W.Hummel, D.Schomburg
compound source
Molecule: L-Amino Acid Oxidase
Chain: A, B
Fragment: Residues 46-534
Ec: 1.4.3.2
Organism_scientific: Rhodococcus Opacus
Organism_taxid: 37919
Atcc: 51882
Other_details: Dsm 43250
symmetry Space Group: P 21 21 21
R_factor 0.172 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.053 110.059 134.530 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand FAD, PHE enzyme Oxidoreductase E.C.1.4.3.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe structure of a bacterial L-amino acid oxidase from Rhodococcus opacus gives new evidence for the hydride mechanism for dehydrogenation., Faust A, Niefind K, Hummel W, Schomburg D, J Mol Biol. 2007 Mar 16;367(1):234-48. Epub 2006 Dec 1. PMID:17234209
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (319 Kb) [Save to disk]
  • Biological Unit Coordinates (2jb2.pdb1.gz) 313 Kb
  • LPC: Ligand-Protein Contacts for 2JB2
  • CSU: Contacts of Structural Units for 2JB2
  • Likely Quarternary Molecular Structure file(s) for 2JB2
  • Structure Factors (4130 Kb)
  • Retrieve 2JB2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JB2 from S2C, [Save to disk]
  • Re-refined 2jb2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2JB2 in 3D
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JB2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JB2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jb2] [2jb2_A] [2jb2_B]
  • SWISS-PROT database: [Q8VPD4]
  • Domain organization of [Q8VPD4_RHOOP] by SWISSPFAM
  • Other resources with information on 2JB2
  • Community annotation for 2JB2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
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