2JDI	Hydrolase	date	Jan 09, 2007
title	Ground State Structure Of F1-Atpase From Bovine Heart Mitoch (Bovine F1-Atpase Crystallised In The Absence Of Azide)
authors	M.W.Bowler, M.G.Montgomery, A.G.W.Leslie, J.E.Walker
compound		source
Molecule: Atp Synthase Subunit Alpha Heart Isoform Chain: A, B, C Fragment: Residues 44-553 Synonym: Atp Synthase Alpha Chain Heart Isoform Ec: 3.6.3.14		Organism_scientific: Bos Taurus Organism_common: Bovine Organism_taxid: 9913 Organ: Heart Tissue: Muscle Organelle: Mitochondria
Molecule: Atp Synthase Subunit Beta Chain: D, E, F Fragment: Residues 47-528 Synonym: Atp Synthase Beta Chain Ec: 3.6.3.14		Organism_scientific: Bos Taurus Organism_common: Bovine Organism_taxid: 9913 Organ: Heart Tissue: Muscle Other_details: Mitochondria
Molecule: Atp Synthase Gamma Chain Chain: G Fragment: Residues 26-298 Ec: 3.6.1.34		Organism_scientific: Bos Taurus Organism_common: Bovine Organism_taxid: 9913 Organ: Heart Tissue: Muscle Organelle: Mitochondria
Molecule: Atp Synthase Delta Chain Chain: H Fragment: Residues 23-168 Ec: 3.6.1.34		Organism_scientific: Bos Taurus Organism_common: Bovine Organism_taxid: 9913 Organ: Heart Tissue: Muscle Organelle: Mitochondria
Molecule: Atp Synthase Epsilon Chain Chain: I Ec: 3.6.1.34		Organism_scientific: Bos Taurus Organism_common: Bovine Organism_taxid: 9913 Organ: Heart Tissue: Muscle Organelle: Mitochondria
symmetry	Space Group: P 21 21 21	R_factor 0.175 R_Free 0.220
crystal cell	length a length b length c angle alpha angle beta angle gamma 105.610 123.130 261.760 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	ANP, MG	enzyme	Hydrolase E.C.3.6.3.14 BRENDA
note	2JDI is a representative structure
Gene Ontology	Chain Function Process Component A, B, C F, E, D G H I
Primary reference	Ground state structure of F1-ATPase from bovine heart mitochondria at 1.9 A resolution., Bowler MW, Montgomery MG, Leslie AG, Walker JE, J Biol Chem. 2007 May 11;282(19):14238-42. Epub 2007 Mar 9. PMID:17350959

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (531 Kb) [Save to disk] Biological Unit Coordinates (2jdi.pdb1.gz) 520 Kb LPC: Ligand-Protein Contacts for 2JDI CSU: Contacts of Structural Units for 2JDI Likely Quarternary Molecular Structure file(s) for 2JDI Structure Factors (1900 Kb) Retrieve 2JDI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2JDI from S2C, [Save to disk] Re-refined 2jdi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2JDI in 3D

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Visual 3D analysis of 2JDI

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2JDI, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2jdi_G] [2jdi_I] [2jdi_H] [2jdi] [2jdi_B] [2jdi_A] [2jdi_E] [2jdi_F] [2jdi_D] [2jdi_C] SWISS-PROT database: [P05632] [P19483] [P00829] [P05630] [P05631] Domain organization of [ATP5E_BOVIN] [ATPA_BOVIN] [ATPB_BOVIN] [ATPD_BOVIN] [ATPG_BOVIN] by SWISSPFAM Domain found in 2JDI: [AAA ] by SMART

Other resources with information on 2JDI

Community annotation for 2JDI at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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