2JDO	Transferase	date	Jan 11, 2007
title	Structure Of Pkb-Beta (Akt2) Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)Ethyl) Amide
authors	T.G.Davies, M.L.Verdonk, B.Graham, S.Saalau-Bethell, C.C.F.Hamlett, T.Mchardy, I.Collins, M.D.Garrett, P.Workman, S.J.Woodhead, H.Jhoti, D.Barford
compound		source
Molecule: Rac-Beta Serinethreonine-Protein Kinase Chain: A Fragment: Kinase Catalytic Domain, Residues 146-467 Synonym: Protein Kinase B-Beta, Rac-Pk-Beta, Protein Kinase Akt-2, Protein Kinase B, Beta, Pkb Beta; Ec: 2.7.11.1 Engineered: Yes Other_details: Piftide Sequence (Eeqemfedfdyiadw) Replaces Natural Pkb Sequence After Residue 464;		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus
Molecule: Glycogen Synthase Kinase-3 Beta Chain: C Fragment: Residues 3-12 Synonym: Gsk3-Beta Peptide, Gsk-3 Beta Ec: 2.7.11.26 Other_details: Peptide Derived From The Kinase Gsk3-Beta		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 21 21 21	R_factor 0.175 R_Free 0.210
crystal cell	length a length b length c angle alpha angle beta angle gamma 45.262 60.700 132.567 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.8 Å
ligand	EDO, I5S, TPO BindingDB	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	A structural comparison of inhibitor binding to PKB, PKA and PKA-PKB chimera., Davies TG, Verdonk ML, Graham B, Saalau-Bethell S, Hamlett CC, McHardy T, Collins I, Garrett MD, Workman P, Woodhead SJ, Jhoti H, Barford D, J Mol Biol. 2007 Mar 30;367(3):882-94. Epub 2007 Jan 9. PMID:17275837

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk] Biological Unit Coordinates (2jdo.pdb1.gz) 62 Kb LPC: Ligand-Protein Contacts for 2JDO CSU: Contacts of Structural Units for 2JDO Likely Quarternary Molecular Structure file(s) for 2JDO Structure Factors (236 Kb) Retrieve 2JDO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2JDO from S2C, [Save to disk] Re-refined 2jdo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2JDO in 3D

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Visual 3D analysis of 2JDO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2JDO, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2jdo_C] [2jdo_A] [2jdo] SWISS-PROT database: [P31751] [P49841] Domain organization of [AKT2_HUMAN] [GSK3B_HUMAN] by SWISSPFAM Domains found in 2JDO: [S_TK_X] [S_TKc ] by SMART

Other resources with information on 2JDO

Community annotation for 2JDO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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