2JFZ	Isomerase	date	Feb 06, 2007
title	Crystal Structure Of Helicobacter Pylori Glutamate Racemase With D-Glutamate And An Inhibitor
authors	T.Lundqvist
compound		source
Molecule: Glutamate Racemase Chain: A, B Ec: 5.1.1.3 Engineered: Yes		Organism_scientific: Helicobacter Pylori Organism_taxid: 210 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.206 R_Free 0.238
crystal cell	length a length b length c angle alpha angle beta angle gamma 61.410 76.310 108.920 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.86 Å
ligand	003, DGL BindingDB	enzyme	Isomerase E.C.5.1.1.3 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Exploitation of structural and regulatory diversity in glutamate racemases., Lundqvist T, Fisher SL, Kern G, Folmer RH, Xue Y, Newton DT, Keating TA, Alm RA, de Jonge BL, Nature. 2007 Jun 14;447(7146):817-22. PMID:17568739

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk] Biological Unit Coordinates (2jfz.pdb1.gz) 89 Kb LPC: Ligand-Protein Contacts for 2JFZ CSU: Contacts of Structural Units for 2JFZ Likely Quarternary Molecular Structure file(s) for 2JFZ Structure Factors (310 Kb) Retrieve 2JFZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2JFZ from S2C, [Save to disk] Re-refined 2jfz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2JFZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2JFZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2JFZ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2jfz] [2jfz_A] [2jfz_B] SWISS-PROT database: [Q9ZLT0] Domain organization of [MURI_HELPJ] by SWISSPFAM

Other resources with information on 2JFZ

Community annotation for 2JFZ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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