2JHE Transcription date Feb 21, 2007
title N-Terminal Domain Of Tyrr Transcription Factor (Residues 1 -
authors D.Verger, P.D.Carr, T.Kwok, D.L.Ollis
compound source
Molecule: Transcription Regulator Tyrr
Chain: A, B, C, D
Fragment: N-Terminal Domain, Residues 1-190
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
Expression_system: Escherichia Coli K-12
Expression_system_taxid: 83333
symmetry Space Group: C 1 2 1
R_factor 0.248 R_Free 0.317
crystal
cell
length a length b length c angle alpha angle beta angle gamma
134.456 72.009 96.814 90.00 98.46 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand AE3, PG4, SO4 enzyme
Primary referenceCrystal structure of the N-terminal domain of the TyrR transcription factor responsible for gene regulation of aromatic amino acid biosynthesis and transport in Escherichia coli K12., Verger D, Carr PD, Kwok T, Ollis DL, J Mol Biol. 2007 Mar 16;367(1):102-12. Epub 2006 Dec 12. PMID:17222426
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk]
  • Biological Unit Coordinates (2jhe.pdb1.gz) 61 Kb
  • Biological Unit Coordinates (2jhe.pdb2.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 2JHE
  • CSU: Contacts of Structural Units for 2JHE
  • Likely Quarternary Molecular Structure file(s) for 2JHE
  • Structure Factors (293 Kb)
  • Retrieve 2JHE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JHE from S2C, [Save to disk]
  • Re-refined 2jhe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2JHE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2JHE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JHE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jhe_A] [2jhe_C] [2jhe_B] [2jhe_D] [2jhe]
  • SWISS-PROT database: [P07604]
  • Domain organization of [TYRR_ECOLI] by SWISSPFAM
  • Domain found in 2JHE: [PAS ] by SMART
    • Other resources with information on 2JHE
  • Community annotation for 2JHE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science