2JIT	Transferase	date	Jul 01, 2007
title	Crystal Structure Of Egfr Kinase Domain T790m Mutation
authors	C.H.Yun, K.E.Mengwasser, A.V.Toms, M.S.Woo, H.Greulich, K.K.Wong, M.Meyerson, M.J.Eck
compound		source
Molecule: Epidermal Growth Factor Receptor Chain: A, B Fragment: Kinase Domain, Residues 696-1022 Synonym: Receptor Tyrosine-Protein Kinase Erbb-1 Ec: 2.7.1.112 Engineered: Yes Mutation: Yes Other_details: Egfr 696-1022 T790m		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pacg2t Other_details: Egfr 696-1022 T790m
symmetry	Space Group: P 21 21 21	R_factor 0.207 R_Free 0.249
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.889 90.304 164.347 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.10 Å
ligand		enzyme	Transferase E.C.2.7.1.112 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	The T790M mutation in EGFR kinase causes drug resistance by increasing the affinity for ATP., Yun CH, Mengwasser KE, Toms AV, Woo MS, Greulich H, Wong KK, Meyerson M, Eck MJ, Proc Natl Acad Sci U S A. 2008 Feb 12;105(6):2070-5. Epub 2008 Jan 28. PMID:18227510

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk] Biological Unit Coordinates (2jit.pdb1.gz) 49 Kb Biological Unit Coordinates (2jit.pdb2.gz) 52 Kb CSU: Contacts of Structural Units for 2JIT Likely Quarternary Molecular Structure file(s) for 2JIT Structure Factors (205 Kb) Retrieve 2JIT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2JIT from S2C, [Save to disk] Re-refined 2jit structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2JIT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2JIT

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2JIT, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2jit_A] [2jit_B] [2jit] SWISS-PROT database: [P00533] Domain organization of [EGFR_HUMAN] by SWISSPFAM Domain found in 2JIT: [TyrKc ] by SMART

Other resources with information on 2JIT

Community annotation for 2JIT at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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