2JMP Dna Binding Protein date Nov 27, 2006
title Structure For The N-Terminus Of Chromosomal Replication Init Protein Dnaa From M. Genitalium
authors T.J.Lowery, J.G.Pelton, D.E.Wemmer, Berkeley Structural Genomic (Bsgc)
compound source
Molecule: Chromosomal Replication Initiator Protein Dnaa
Chain: A
Engineered: Yes
 Organism_scientific: Mycoplasma Genitalium
Organism_taxid: 2097
Gene: Dnaa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Lic(Pb3)
methodSolution NMR
note 2JMP is a representative structure
Primary referenceNMR structure of the N-terminal domain of the replication initiator protein DnaA., Lowery TJ, Pelton JG, Chandonia JM, Kim R, Yokota H, Wemmer DE, J Struct Funct Genomics. 2007 Mar;8(1):11-7. Epub 2007 Aug 7. PMID:17680349
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (540 Kb) [Save to disk]
  • Biological Unit Coordinates (2jmp.pdb1.gz) 28 Kb
  • CSU: Contacts of Structural Units for 2JMP
  • Original NMR restraints for 2JMP from PDB
  • Retrieve 2JMP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JMP from S2C, [Save to disk]
    • View 2JMP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2JMP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JMP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jmp_A] [2jmp]
  • SWISS-PROT database: [P35888]
  • Domain organization of [DNAA_MYCGE] by SWISSPFAM
    • Other resources with information on 2JMP
  • Community annotation for 2JMP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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